FAST is a program for aligning
three-dimensional protein structures. Given two PDB files, it will compare
them and try to establish residue-residue correspondence between the two
proteins, so that structural similarity is maximized. FAST is significantly
faster than similar methods. As a result, the web
server can send alignment to your browser quickly.
However, frequent users are encouraged to download the executables and run
it offline. FAST has been successfully compiled on many platforms. If
your system is not found below, please
drop us a note
and we will happily expand our list.