CLOVER Results

Gene Regulation Hub
Color key: Broad-complex Broad-complex AP2alpha S8 Ubx SQUA SRF RXR-VDR Bsap Brachyury TBP Irf-1 CF2-II Yin-Yang GATA-3 GATA-2 GATA-1 Tal1beta-E47S Myc-Max Max E4BP4 SU
    = protein-coding

Over/Under-represented Motifs:

MotifOverall Raw ScoreP(userbgseq)
SRF-5.010
RXR-VDR-2.060
Brachyury-2.940
SU-1.090
GATA-1-0.09930
GATA-3-0.8210
Yin-Yang0.5680.001
Max-0.940.001
Myc-Max-1.770.001
TBP-2.120.002
GATA-2-0.8190.004
Tal1beta-E47S-0.06760.005
CF2-II-1.360.006
Bsap1.10.007
Ubx-1.320.993
SQUA-1.020.996
E4BP4-4.170.999
Broad-complex-0.6451
Broad-complex0.2921
S8-1.521
Irf-1-2.791
AP2alpha0.2141

Overview of Motif Distribution: ( bar height = score )

NM_022427|gpr88|1600bp
1601 bp		+
-
NM_078477|KLF16|1600bp
1601 bp		+
-
NW_000028|A2AR|m1A|1600bp
1600 bp		+
-
NM_008313|htr4|1600bp
1601 bp		+
-
NM_011268|rgs9|1600bp
1600 bp		+
-
NM_013643|ptpn5|1600bp
1601 bp		+
-
NT_039474|ARPP-19|ProSeq_37|contig|1600bp
1601 bp		+
-

Detailed Sequence Output:

NM_022427|gpr88|1600bp
sequencepositionstrandmotifscore   Ranking_ratio
actttagttta 96 - 106- Broad-complex 7.44  0.001147
acataaaaagccag 215 - 228+ SQUA 7.85  0.009753
taatt 527 - 531- S8 6.28  0.02654
accatc 594 - 599+ Yin-Yang 6.4  0.004551
accatc 605 - 610+ Yin-Yang 6.4  0.004551
ccgacagctggt 671 - 682+ Tal1beta-E47S 8.06  0.008427
gacagctggtgg 673 - 684- Tal1beta-E47S 8.37  0.00668
actatggtactcacac 884 - 899- SU 6.86  0.01125
aatta 964 - 968+ S8 6.25  0.02712
taatt 1003 - 1007- S8 6.28  0.02654
aatta 1004 - 1008+ S8 6.25  0.02712
taatt 1097 - 1101- S8 6.28  0.02654
gtatatttat 1122 - 1131+ CF2-II 6.11  0.02501
ctctgagaaaagaagt 1132 - 1147+ SU 6.33  0.01743
ctgaaaaaggtatt 1328 - 1341+ SQUA 6.32  0.02639
taatt 1372 - 1376- S8 6.28  0.02654
agtgggtttgccacat 1439 - 1454- SU 7.47  0.007143

   1 ATCATGAAAAGCTCAGAGGTCCTTCTCATTCATCCTATGGAGTCTTCAGG 50
  51 GAAATTGCTTTTCCCCAACACCCACTATTCAAAAATAGGCTTTAAACTTT 100
 101 AGTTTAATAATCACAGCAGGCCTGAATAAAAGTTGCTGAGTGTGTTCTGG 150
 151 GGACAGGGTGCAGTAAAGTGCCTGACAAACAAGTATCAGTCCTGAGTTCA 200
 201 GATCCAAAGTGCGCACATAAAAAGCCAGGCATGGTGGCACATATCAGTAA 250
 251 TCCCAGCTCTGGGAGAGCAGGAACAGAAGATTCTTGGAGATCAGTGGCCA 300
 301 GCCAGCCTAGCAAAAGCCGTGCAGGTTCAGAGAGAAAGAGAGAGAGAGAG 350
 351 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGAAGGAGGAGGAG 400
 401 GAGGAGAGGGATCACCACACAGTTCCTACTCAGCACACACACAACTTTCC 450
 451 AGTTGTCATATTTTCCATTACATTGGGTCATTTGTCACAATCGATGAAGC 500
 501 ATCCTGACACGTTTACATTGACCCCATAATTTACACACAGGTTTTTTGGG 550
 551 TGTTTATTTAGTAGGTTTGGACAAACGTACAGTGATGTTTTCCACCATCA 600
 601 GAGTACCATCCAGAGTAGTTTCCCTGCCCTGTATTCCACCTCCCGGTCCC 650
 651 TAGCCCCCCCCCCCCCCCTCCCGACAGCTGGTGGTCCCTGCAGTTTTACG 700
 701 TTTCCCAGTATGGAATACAGTTGGGCTTGGGCAGTGCGCAGCCTTTTCAG 750
 751 ATGCTTCTTTTGCTTAATAACAAGCATTTCCGGTTTCCTTAGGTGTTTTA 800
 801 TGTCTTGACAGATGATTCCTCTTCATTGCTAACTGGTGTTCCATTGTCTA 850
 851 GCTGGACGATGGACTCCATCTTTAGATCGCCTGACTATGGTACTCACACT 900
 901 TCTCTCATCCCGCCGAAACACAAGCCAAGAGGAGAGGTGTCTAGCGATGG 950
 951 GAAAAGGAATTGAAATTATGATTTGAGCTAAGGCTCGCATATTTTCTGTA 1000
1001 GCTAATTACTCATGTCCCACTTTGCCAAGGGTGTGTGTGTGTGTGTGTGT 1050
1051 GTGTGTGTGTGTGTGTATGTGGCTGAATTTCAATTCAAATGTAAGGTAAT 1100
1101 TTTCTCTGAAATTGTACTGGGGTATATTTATCTCTGAGAAAAGAAGTCTT 1150
1151 ACCTCCAGGATGATTCAGATGGAGATGAAATTTTACTCTAACATTTAAAG 1200
1201 GAGAGGAAAAAAAGGAAGGAAAGAAAAAAAAATCAGGCAGAGTGAAAAAT 1250
1251 GAGACAGAATGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 1300
1301 AGAGAGATTTGTTAACCACAGGATTCTCTGAAAAAGGTATTTTTCTCTTT 1350
1351 TACAAGTTAGCAGTTACTGAATAATTCATGAAGCAGGGAAAGGCTGTCTT 1400
1401 CTCCCTGGGTGATGGATAACTGAGCAGGAGAGGCTCCAAGTGGGTTTGCC 1450
1451 ACATCAGCCAGCGCTCTTGCTTGGAGCACAGGGTGCGCTCCTCTCCAGCT 1500
1501 CAGTTTCTTCTGCTCTTGTAGCCAGGCATCTTCGCTGCTGCTGCCTGCCT 1550
1551 GCCCACCCTTCTGGGCTTGCAGCCTACCGCTTGACTTTCTCCAATTCTAC 1600
1601 T 1601


NM_078477|KLF16|1600bp
sequencepositionstrandmotifscore   Ranking_ratio
agagcactggaacctgacca 43 - 62+ Bsap 7.12  0.003605
atgacacccag 96 - 106- Brachyury 6.42  0.02898
taaacatgatg 146 - 156+ Broad-complex 8.72  0.0001807
tcctactt 272 - 279+ Broad-complex 6.53  0.001764
accatc 318 - 323+ Yin-Yang 6.83  0.001428
ttcacaacttg 326 - 336- Brachyury 7.69  0.01178
atta 341 - 344- Ubx 6.54  0.0007044
atta 369 - 372- Ubx 6.54  0.0007044
ctgttcactttt 492 - 503- Irf-1 6.1  0.03128
ttcacttttgccatac 495 - 510- SU 6.36  0.017
cgaactctacaaact 557 - 571- RXR-VDR 9.44  0.001047
caaactcgatcagct 566 - 580- RXR-VDR 6.7  0.01194
ccaagaatggcatt 642 - 655+ SQUA 7.23  0.01546
gcgcacgtggc 730 - 740+ Myc-Max 6.81  0.01271
gcacgtggcc 732 - 741- Max 7.07  0.007574
ggccacgtgc 779 - 788+ Max 7.07  0.007574

   1 AAAGTATAGTGGGGCCTAGAGAAACATGGCCAACTCGACGGCAGAGCACT 50
  51 GGAACCTGACCAAGTCAGCTTGGGGTGCAGGTGGGGAAGGTAGAGATGAC 100
 101 ACCCAGAGCAAGGACCTCTGCCACCGGTTAGCCTCTGCTGGGGAATAAAC 150
 151 ATGATGGAGCTCGGACCGACAGACTGCTGTCGGTTGGGGTGCTTCGCCCC 200
 201 CTGGAGGCTGCGCGGGCCACTGCATGGCCTCCGCAACCCGGCGGGAGTTA 250
 251 GGAAGGGGCGGGAGCCTGGTCTCCTACTTCCGCGCAACCGGCGCCTAGGG 300
 301 CCTGGGGCTTTTAGGGGACCATCATTTCACAACTTGGTCGATTATCCATG 350
 351 GAAGTTTCCAATCGCTCCATTAGTCAGCCTCAGTTTCCCTGTCCCAGTCT 400
 401 CAAAGGGCCAGTGAGGGAGGGACGAAACAACCAGAACTCCAGTGTCCCTA 450
 451 GCTTCGCATAGATGACCGAGCCAGACCTTCTTATTGCAGCCCTGTTCACT 500
 501 TTTGCCATACCGGTTATCCACAGGCCTAGTGATTCTCGAGTCCCGGTGCG 550
 551 CAAAGACGAACTCTACAAACTCGATCAGCTAGGCAGGGTAGTGGGTACCC 600
 601 TACGCTCTCAAGTTCGACCTCCGGGATATTTTGTCCCCAAGCCAAGAATG 650
 651 GCATTGGGGACCCAGAGATGGGGAGTCAGGATTGGTGGGTTATTGCCCTG 700
 701 CTTCAAGGCCAGGAAGGAGGGGGAGGGTCGCGCACGTGGCCCGGGGGCGG 750
 751 GGCAGCGCGCTTCCGCACCCCCACTCCTGGCCACGTGCGGATCGCACTCC 800
 801 CCACCCCATCCCCCGACACACACACCGCGGACAGGGGCGCGTCCCAGTGC 850
 851 CTGAATGTGGAGTGGGAGGAGGGACGAGTTGGGGAGGGGATGAGTTCCCG 900
 901 GCGACTGCGCACCGGGCACAGCGTGGTGGGCGCGCCGGGAAGAGGATGGA 950
 951 GCGCGCGCCCGGAGGAGGCGTGGCGCGCACTGGGGGTAGGAGGCGGAGCA 1000
1001 TCCGAGGCTGGGGTGGGGTGTGTGGGCGTGTCGCGGGGGTGGGCGTAACT 1050
1051 CTCAAAGCCTTGGGAGGTGACGATCCGGGAAGGGCACTGGTGAGGGTAGT 1100
1101 GCGTACCAGGCCAGGGGAACGATTTCCCTCCGTTTGGCTTGTTCTTACGT 1150
1151 GGAGAGGGCACAATCCAGGGATTTGGGGACCCCGGGTGCTCTGCTGGTAC 1200
1201 ACGAGGGGAGGGGGGGTTTGAAGTGCGGGAGGACCGGCAGCTGGCAGTGT 1250
1251 GAGCTCCGCCCATCAGCGGTGGCGCGCGACTCTCTGGAGGACCGAGGGCG 1300
1301 CGGCAGGAGGGGGCGTGTCCGCGGTGGGGAGAGGGCGTGGCTACTGAGCC 1350
1351 CCGAGGGGGCGTCCTCCAGGAGGGGCAGGCTGCGGCCGCCCCCGCGGGCT 1400
1401 CCGGTGCGTCAGGGAGCGTCAGGCGGGGCGGGGCGGGACTGAGCGCGGGC 1450
1451 GGCGGCGGCGCGCCGGGGCCTCCTCCTCCCTTCCCTCCTCCGCCTCCCGC 1500
1501 ACTCTAGCAGCCGCTGCCGGCCGGACGGGCGTAGGTCCCACCGCCTCCGC 1550
1551 TTCTCTCCCGCCGCCGATTCCGTGTCTCCGCGTCCTTGCCCGGCATGTCG 1600
1601 G 1601


NW_000028|A2AR|m1A|1600bp
sequencepositionstrandmotifscore   Ranking_ratio
gccatc 156 - 161+ Yin-Yang 6.41  0.004359
tgtttatgctccactgtgtt 177 - 196- Bsap 8.42  0.0008972
gccctaagg 310 - 318+ AP2alpha 6.38  0.01069
gccagatggacc 479 - 490- Tal1beta-E47S 6.42  0.02651
aacagctcgttg 588 - 599- Tal1beta-E47S 6.85  0.01964
taatt 691 - 695- S8 7.05  0.01017
gtaggtgacaa 748 - 758+ Brachyury 6.54  0.02571
aatta 971 - 975+ S8 7.1  0.009035
tcgtgggatcctttgg 1067 - 1082+ SU 6.36  0.017
ggggccctgctgcggagaga 1179 - 1198+ Bsap 7.6  0.002147

   1 CGGCTGGGAGAGCTTCAGGGAAAAAAAAAAAAAGGCCTGGGTTAGGCCCC 50
  51 TGCATAGCTGGTGTCCTGGTGGCTATGGAGTCAGTGGTGTTACTTGGGGG 100
 101 AAAATACTGGTGGTGTGACCAGAAGCAGCAGCAGGGCTTTAGGCTCAGGG 150
 151 ATGGAGCCATCTCACCTCGACAGAAATGTTTATGCTCCACTGTGTTCCAC 200
 201 TGGGGACACTGAGGATGGAAAAATGTTAAGGCCTGGGTCAGCCTTTTAGC 250
 251 ATGGGCTGGTCTGATTGCAGACTGCTTCAGTGCCCTCTAGTGAAGATTCC 300
 301 ACTAGAGAAGCCCTAAGGGACATAGGTGGTTATCCTTTGTCCCGAGGAGA 350
 351 CGCCAGTCAGGAGAGTCAGCATTCAGGGGCTCACTGGGACTGATGGGGCC 400
 401 TGAATGGACAGTGAGTCCGCTGCTGCTTCAAATTCTGAAAGCTAGAACAG 450
 451 GAGCTATTTTAGTCATGGACCTGTTGTGGCCAGATGGACCCCTGATGAAT 500
 501 GCTGCTGTAAACACAGAGGGACATGGTATGTACCTGGAGGTGGCACCCGT 550
 551 ACCAGATCTGGCCATTCTGTCCAGAATGTGAGTTATAAACAGCTCGTTGG 600
 601 CAAGTAGCTTGTGCAAAGCTGGGACTCACAAGGACTTAGCCATAGGTGTC 650
 651 TCTGCCTGACCTTAGGAGCAATGGCATCACTTAGGGACAGTAATTCCGTC 700
 701 AGTTGCTGCAGACTTTGTCTTCTCCTTCCAAACCTTCAGTCAGCCTCGTA 750
 751 GGTGACAAAGGACAAGCTGCAGCTGTAGCCACGCTGACTCTAGACTGAAG 800
 801 CACTGGCAACATCGCAGAAGCAAGCGTGCGGTTCATTTCCTTTAGCTCTC 850
 851 CATTTTACCTCTCGGCCAATTTCAGGTGGAGAGGACCCTTCTCCCCAGTC 900
 901 CTCCTGTTCCACTCATCCATCCTGTCCTTGAGGAGAGAAGGAAAGATGTG 950
 951 TCTACATGCAGGGGTCTGAAAATTAGCCTCTAGCTTCTTGTTCCTAGCAG 1000
1001 GCACATCTGAGGTCCCATGCAGGTCAAGTACTGCAAAGGATGGACTGGAG 1050
1051 GGCGGGGGTAGGGGTGTCGTGGGATCCTTTGGTTCTTGCCTGGGGAATAA 1100
1101 CAGGCTATTGGGAGAGTCCTGCTTACGATGAAGTTTTGCAAGCTCATGGA 1150
1151 GCATACCCTGGGGAGTTTGGGCTCAGCTGGGGCCCTGCTGCGGAGAGAGC 1200
1201 AGGACTTCCCCTTTCCAGGGGTCTCAGCTCTTCCTGTGAGCTGACACTGT 1250
1251 GACTCTAGGGTAGCCTTTCCAAATCTACGGATAAGCGCTGAAAGGAGCCC 1300
1301 TCGGTATCATCTGGGACCCAAAGGTGTTACAGTCTGACTGGAGAAACGGA 1350
1351 GGCCCGGGAACGAAAAGCATTCTTGCCCACGGTCCTCCAATGAGTCCTTA 1400
1401 CTGAGCACCTGTTTTTCTAAGCTGCATTCCCTGCCTCAGTTAGGTAGGCA 1450
1451 GAGGGACAGGAGAGGCGAGGTGTGGGAGGAAAGCGGGAGGCGGATCCCTC 1500
1501 AGAGAAGGGAAGCAATCGCAGCGCCTGCCCTGCCTGGCTGTGCAGCCTGC 1550
1551 TGGCAGGAGCGCTCTTGCTCTCGGAGCAGTGGGCTTGGCTTGGACCCTGC 1600


NM_008313|htr4|1600bp
sequencepositionstrandmotifscore   Ranking_ratio
gccatc 72 - 77+ Yin-Yang 6.5  0.00339
aatactatataaatta 246 - 261+ TBP 7.7  0.01108
aatta 257 - 261+ S8 6.31  0.02605
acaaatttaataat 326 - 339+ SQUA 6.23  0.0278
taatt 336 - 340- S8 6.25  0.02712
aatta 337 - 341+ S8 6.31  0.02605
taatt 351 - 355- S8 6.25  0.02712
gctttcactgtg 363 - 374- Irf-1 7.35  0.01328
gccatc 400 - 405+ Yin-Yang 6.5  0.00339
agatag 430 - 435+ GATA-3 6.06  0.004919
aaaactaagca 690 - 700+ Broad-complex 6.32  0.006287
agcagatggagt 1106 - 1117- Tal1beta-E47S 6.71  0.02166
agtcacgtgg 1253 - 1262+ Max 8.58  0.002197
agtcacgtggt 1253 - 1263+ Myc-Max 8.56  0.002529
gtcacgtggtc 1254 - 1264- Myc-Max 8.62  0.00244
tcacgtggtc 1255 - 1264- Max 9.98  0.0002184
cacaggtggtca 1270 - 1281- Tal1beta-E47S 6.02  0.03518
agatag 1306 - 1311+ GATA-3 6.06  0.004919
gatggc 1312 - 1317- Yin-Yang 6.47  0.003704
acaactgaaagc 1364 - 1375+ Irf-1 6.59  0.02267
gcccagagg 1497 - 1505+ AP2alpha 6.3  0.01206
gcccctggc 1513 - 1521- AP2alpha 6.93  0.00463
gcccctggc 1513 - 1521+ AP2alpha 6.77  0.005866

   1 CTTGCCTGTGATAACTGCTTAGCTACTTTTTGTCTCCTCAGTTCTGTGTC 50
  51 AGACAGCTGCCTTTGCAGCACGCCATCACTGCTGGCTTAACACAAATCGC 100
 101 TGGCAATGGCAGGCATTGTGACATTGACACAGAGAAAATGGCTTAAAATA 150
 151 CAAAGTGGGTTGGGTTAGCAAAGCAGCTGGATGCCTGGGCCTTCCTTCAA 200
 201 CATTGTTCATCAAAGAAAGGCACTGGTGTGACCGTGTGAGAGACAAATAC 250
 251 TATATAAATTATCCATCATGGCAGCAAATTGCTTGATGACTTAAGATGTG 300
 301 TAGTTACCTCACAATTGTTCTGGTTACAAATTTAATAATTACTAGTGTAC 350
 351 TAATTTGATATAGCTTTCACTGTGTTAATATCAATGTTTCTGCAGGGCTG 400
 401 CCATCCTTTCTGGATCGGGGGCATGTTGGAGATAGAGAGACTCTGGACTG 450
 451 TCTTCACCTTCCAAAATCTGTCTTGTCTTCTTTGACTCATTCATCTTCAA 500
 501 CCCCATATAGTCCTGTTATCCTGAAGGAAGGCAATAGGCCATTAGGAAGA 550
 551 CCAACTAAACTCAAGAGACTTTTTGATGAAAAGGGTTAGTCAATTTAAAC 600
 601 TTTTCGGCCAAGCATGATATTTCCTGCAATCCCAGCACTATGGAGGTTAA 650
 651 AGCAATGAAGACCTCAAGTTCCAGCCTGGATCCTGTCTCAAAACTAAGCA 700
 701 AACAATCAAGCAACAGGACAAAGCGACAAAGCAGCTGGGGACTAGCCTGG 750
 751 GATGTGTGAGACTTTGGGTTCAGTCCTCATACTGGTTCCAAACTATCCAG 800
 801 CTCAAACTCCTGATTTCACCCGAGCTAGTTCCAGCACAATAGTAGGTTAA 850
 851 TGATTTTTAAGGCTGTCTTGGAAGATTTCTTTACTCTCTGAAGTTAATCA 900
 901 CTGCTCCTAGTTCTTCTGTTGGGTAGTTTTCCTGGCAGCCTTGGTGGTAC 950
 951 TTGAAGATGAATTCTTCATTCCAAAGTTTTGACGCCCATCCTACATCTAA 1000
1001 GCGATGAAGGCTCGGCCTTTTCCAAACTGCCCTAGCAGTGTGGTCTCATT 1050
1051 AAACATTTGCTCTATTTCATCCTGGTGATTGGAGGCTTCGATCAGACACG 1100
1101 TTGACAGCAGATGGAGTTTGCTCTGTTATAGGCGCTCACAGATACTTCAG 1150
1151 ATCCCTAAGTGGTACCCATGCCTTGAATTTTGGAAACCCGTAACACTACT 1200
1201 GCCAGTTTGTACCCTGCTTTCCTTGTGAGAGCACTGAGGCTGGAGCCAGT 1250
1251 CTAGTCACGTGGTCAAGGTCACAGGTGGTCAGAGCTGGGAGAACCCGCTA 1300
1301 ACTTCAGATAGGATGGCAAGAGTGGACTAACAAGGAAGGGCTGATCCCTT 1350
1351 AGGGAGCCTTTGGACAACTGAAAGCATTAACTCTGCAGAACTTGTGATCC 1400
1401 AATTCCCAAAGTGCCGGGTACTCTCTTGAAGGCCCCTCCCAGACAAACCC 1450
1451 TGCTCTGTGCCAGGCCGAGTCAGGCGTGAGAAGGAGGAAGTAGGCTGCCC 1500
1501 AGAGGAAGGATTGCCCCTGGCACAGACACCTCGGAGCATTCTCGAGTTTA 1550
1551 TTGTCTCTGAATAGAGGAAGTGGACACTCAAAGTGGTGAACGGATTTGCC 1600
1601 C 1601


NM_011268|rgs9|1600bp
sequencepositionstrandmotifscore   Ranking_ratio
attttcgatttt 35 - 46- Irf-1 6.02  0.03341
agctcacataa 234 - 244- E4BP4 6.06  0.01894
gctcacataagg 235 - 246+ SRF 6.12  0.03313
gcccagggg 366 - 374+ AP2alpha 7.03  0.003974
ccaggggaaacgagca 368 - 383+ SU 6.41  0.01618
aaatagtg 504 - 511- Broad-complex 6.02  0.003392
gtatatctat 610 - 619- CF2-II 6.59  0.01689
gtatatctat 610 - 619+ CF2-II 6.75  0.01462
gagcaggtggc 756 - 766+ Myc-Max 7.55  0.006744
tggccactctggaggcatct 763 - 782- Bsap 7  0.004254
caaacaaatac 846 - 856+ Broad-complex 6.26  0.00687
aatta 867 - 871+ S8 6.44  0.02377
taatt 883 - 887- S8 6.23  0.02757
gcctaaggg 889 - 897+ AP2alpha 6.11  0.01616
tactagtt 962 - 969+ Broad-complex 6  0.003475
aatta 987 - 991+ S8 6.44  0.02377
tctacatctggt 999 - 1010+ Tal1beta-E47S 7.51  0.01259
tacatctggtat 1001 - 1012- Tal1beta-E47S 6.14  0.03251
tcttataaagaaat 1128 - 1141+ SQUA 6.92  0.01876
agctcctttcccactg 1197 - 1212- SU 8.59  0.002473
ttctgtatataaagag 1226 - 1241+ TBP 8.74  0.005432
gtatataaag 1230 - 1239+ CF2-II 6.22  0.02321
ccttggggc 1259 - 1267- AP2alpha 6.91  0.004737
gccggacgc 1329 - 1337+ AP2alpha 6.43  0.009898
gcgcgcggc 1383 - 1391- AP2alpha 6.6  0.007625
ggtgcgagggagagtcgagg 1442 - 1461+ Bsap 6.06  0.01154
ggagagtcgaggggtggagg 1450 - 1469+ Bsap 6.37  0.008564
agtcgaggggtggagggcgg 1454 - 1473+ Bsap 6.01  0.01205
gccctgcgc 1482 - 1490+ AP2alpha 6.59  0.007699

   1 GGCTCCTATTCTAGAGCTGAGCACAATTCCTTACATTTTCGATTTTCCTC 50
  51 ATTGCTGAATGACTTAAGCTCCCAATCCACCCCCTTAGGAAATCACCTCT 100
 101 ATTTTCCTTACTCAGAATTTATAGAACTAAGAAATGCTGGCTTTATTTGC 150
 151 TTATGTGTATTCCGTGTAACACTAAACCCAGAAGTTGTTCCATGAGGAAA 200
 201 CGTCAAGACATTGCAGCTTTTTCCTGGGATCCCAGCTCACATAAGGAACA 250
 251 CGCTTCTCAGAGGTCTGGTATGATTGGCAGAAACCCCGGTCCTCTGCATC 300
 301 AACCCATCCCTGGAGAGCTCACATCCTTTTCACTGAAGTTTGTGATGTGG 350
 351 GGGCTTCTGCATGGGGCCCAGGGGAAACGAGCACTTTGACATTGTTTGCA 400
 401 AACTGGAGTCAGTGTTATGTGAACATGTGTGTGAGCATGCTTTCTGAGAG 450
 451 TGTCCACAGCGTTCAACGGATTCTTACAAATAAATGTGCCTGAAAGGAAA 500
 501 AAAAAATAGTGGATAAGGGCTTAGATGCTAAAGGTATACCAGTTGACTGA 550
 551 GCACCACTAAGGCGAATCCCTTTGTTCTTTTTCAACTTAAACATGCGAGA 600
 601 TGCGACATTGTATATCTATCCTGCTTGTGTAGACTAAGTGGAGGCTTCAT 650
 651 CCTTTTTTTTTTTTTCTGGATATATGCCAATATAGGCTCATCAATTGGTG 700
 701 ACACATACCAATCTCCCCAGACAGGTTGACCCTGGAGGGGGGTTATGAAT 750
 751 GTGTGGAGCAGGTGGCCACTCTGGAGGCATCTATTCTGTCCCATCTGCCC 800
 801 AATTTTTAGGTCAGTTTAAAAGTTCCTTTAAGAGTCTATTAAAGACAAAC 850
 851 AAATACAAGTATCGGGAATTAGAAGTAAAATATAATTTGCCTAAGGGCAC 900
 901 ACAGTTAGCTAAAGAGTGTCTATGGGCTTCTTCACTTCTTCCTCTCTTGA 950
 951 AACCAACATCTTACTAGTTAGTCTATTTGTTAGGCCAATTAATAAAAGTC 1000
1001 TACATCTGGTATTTTTTTTTATCTTAAATATCTATCTAGGAACAATCACA 1050
1051 GCGTTGCTCACTTATCTATTAGAAGCTTCATGGACACTTCTATTGGATAC 1100
1101 CATGAAACTGTTTAAAATTTTCTCTTCTCTTATAAAGAAATTCTTAGCGC 1150
1151 TGACTTACCCAAAGATGTCCAACTCTCCTGCAAGCTGGCGTCGGAAAGCT 1200
1201 CCTTTCCCACTGTGCTCTGTCTCACTTCTGTATATAAAGAGATTAACAGG 1250
1251 CTCACACACCTTGGGGCAGATGCTCTAGCTTCAGCATCCCTGATCTGGCC 1300
1301 TTCCTACCTGAGGTTTGGTCCAGGTGGAGCCGGACGCCGCCCCCTGGTGG 1350
1351 CAGGTGGGAGCCCGCGCAGTGCATGCTAATGAGCGCGCGGCGCTGCTCGC 1400
1401 TGATTGGTTGGCGCGAATTCCAGCTGCTTTGCATGTCGGCGGGTGCGAGG 1450
1451 GAGAGTCGAGGGGTGGAGGGCGGTATTCTGGGCCCTGCGCGCTCCGCTCT 1500
1501 CTGTGCCTCCCGGTCTACGCCCAGGCTGGGGCAGACCAGGCTGGCTTGTG 1550
1551 AACTTGGGGGTTTCCCCTTTCGCTCCCATTCGTGTTGTGGTCGTGAATTC 1600


NM_013643|ptpn5|1600bp
sequencepositionstrandmotifscore   Ranking_ratio
gccatatggctt 59 - 70- Tal1beta-E47S 6.13  0.03279
ggctttctggagcggagaga 66 - 85+ Bsap 8.07  0.001218
gccatc 120 - 125+ Yin-Yang 6.11  0.008831
gccatc 247 - 252+ Yin-Yang 6.11  0.008831
atttctttctttct 296 - 309- SQUA 6.23  0.0278
ctttctttcttccttttttt 300 - 319- Bsap 6.76  0.00556
ttcttttt 452 - 459+ Broad-complex 6.09  0.003093
ctgtcccgctgcataagtca 651 - 670- Bsap 7.28  0.003148
acagaaaaagaagg 725 - 738+ SQUA 6.88  0.01899
catccatctgtc 894 - 905+ Tal1beta-E47S 7.03  0.01747
gccctaggc 1171 - 1179+ AP2alpha 6.29  0.01221
ggagcacgcaaggagagcgg 1356 - 1375+ Bsap 6.5  0.007426
gtgtgagaagccggga 1569 - 1584+ SU 6.49  0.01532

   1 AGAATCACCAAAGACCTCATGGAAGTAGCACATTAAAGAGGTAACGGGAG 50
  51 AAAGGGAAGCCATATGGCTTTCTGGAGCGGAGAGATTAACAATGTGAAGG 100
 101 TCCTGGGGCCTGAGAGGCTGCCATCTTGGTTATGGCCACAGATTGGGAGG 150
 151 AAGGAGTGAAGGGCAGGAAGTGAAGTTAGAGCATTAAAGGACGCCTGCTC 200
 201 ATGAAGACCCTCCCAGGCTATAACGGGCGCTTTGGTGAATGCAATGGCCA 250
 251 TCGGCTGTGGGAGTTCTGACAAAGGATAGATGCAACCTGGTGCGCATTTC 300
 301 TTTCTTTCTTCCTTTTTTTCCTGGTGCGCTTTTCAAAAGGATCGCTCGGA 350
 351 GTACTCTGTAAAGAAACAGCTGCAGGTGGCCAGGGACGGAAGACTAGTAA 400
 401 AGAGGCTACTGCGGAAATTTAAGCTACAGAGGAGAGCAGTGGCTGGAACC 450
 451 ATTCTTTTTAGTAGCCGCGTCCTGCTTCTCATTTTCGCCATGTAAAACTG 500
 501 CTGCGTGTGCGATCCACTCTGCCCCCACAGAGCCTGCAGTGGGGTGAAAT 550
 551 GTCAGGAACAAGCCCCGGAGAAGGTAAGATTGGAAAAAATGCCACAACTG 600
 601 GGCAGCCCTTGGAACCCTGGCGCCCACATGAAAGCAAAGCGGATGGGTGC 650
 651 CTGTCCCGCTGCATAAGTCAGGAGAGCTAACCCCGATGGAGAGAGAGGTG 700
 701 TCCACCCGCTCTTGCTCTACAGAGACAGAAAAAGAAGGAGTGGGAAGTAA 750
 751 GGCGCCTCCTCCGAGTCCTGGAACAGGTCCTGAGCTCCCGGGTATGCAGT 800
 801 GCTCCGCGGGTACAGGTGCCAGCTACAGCATCCCCCTGTGCACCAACACT 850
 851 CCCAACCCAGTTCTGACCCCTTTGTCTAGCTTGCCTCTACCCTCATCCAT 900
 901 CTGTCTGTCCGTCCTGCTCCAGATAAAATGTGTACAGCCCTAGTGGGGTC 950
 951 CCTCTGGCGGTTGCCGTAGTCGCGCAGCCCCGACCCGGGGCTCCGGAGAG 1000
1001 AAGAAAATCATGAATGAAATGGATGCGGCGCTCCCACTCCCCCGCCCTCT 1050
1051 CAGTCCAGGCAACCTTGGCATGGGGGCGGCGCCTGTGGGGACTCCGTACA 1100
1101 GAGTTGTGGCGGGTGAGGGGGCACTGGAGATGGGATCCCATGTTAAGGGT 1150
1151 CTGTGGTCCGCCCCTCTAGAGCCCTAGGCGATGCTGGAGCTCCCCACCCC 1200
1201 CACCCCGCCAAGCGGGCGAGCCCTGCGCAATTCCCGGGGAGCGGCGCAAG 1250
1251 CCCGTCCGGGGGCGGGGCGGAGCCCGGGCTGGGGGTGCCCAGCAGACCCG 1300
1301 GCAGCTGCACCCGCGACTCTGCAGTTCAGGCGCATTTGGTGGGGCGATTG 1350
1351 GGCAGGGAGCACGCAAGGAGAGCGGGACTGAGGGCTCCGCGGACAGACCG 1400
1401 ACAGACGGACGCCCCCGCACACGCAGACGCACCGAGCTCCGCACGGCCCC 1450
1451 TGTCACACACAGACAGGGACACACGCAGACACGCACACTCGCGCGCTCAC 1500
1501 ATCCTCCCGCCAGCCTGCTTGTCCGCCGGCGCCTGGAGCCCGCTCTGGCC 1550
1551 GGTAAGTGCGGCGCCTTTGTGTGAGAAGCCGGGAGGCATTGGTACGGGGT 1600
1601 C 1601


NT_039474|ARPP-19|ProSeq_37|contig|1600bp
sequencepositionstrandmotifscore   Ranking_ratio
tgacatgttcacacag 3 - 18- SU 6.59  0.01412
caggatatatattgtg 30 - 45- TBP 6.09  0.03195
acaggtgtgaa 153 - 163+ Brachyury 7.73  0.0117
aaaaatatatatacac 367 - 382+ TBP 6.58  0.02344
aaatatatatacacac 369 - 384- TBP 6.29  0.0283
atatatatac 371 - 380- CF2-II 8.35  0.002706
atatatatac 371 - 380+ CF2-II 8.07  0.003608
atatatacac 373 - 382- CF2-II 6.23  0.023
atatatacac 373 - 382+ CF2-II 6.8  0.01411
atacatatat 389 - 398- CF2-II 7.76  0.005769
acatatatat 391 - 400- CF2-II 6.92  0.01263
atatatatat 393 - 402- CF2-II 7.17  0.009828
atatatatat 393 - 402+ CF2-II 7.17  0.009828
atatatataa 395 - 404+ CF2-II 6.35  0.02059
cttgctatataagaac 461 - 476+ TBP 7.12  0.01658
tggccagctggc 605 - 616+ Tal1beta-E47S 8.42  0.006312
gccagctggcca 607 - 618- Tal1beta-E47S 8.61  0.005485
ccagctggc 608 - 616- AP2alpha 6.03  0.01835
gccatc 615 - 620+ Yin-Yang 7.57  0.0001967
ccatcc 616 - 621- GATA-1 6.84  0.0002271
gaatatatac 708 - 717- CF2-II 6.42  0.01969
accagcggc 765 - 773- AP2alpha 6.4  0.01033
gcccccaag 810 - 818+ AP2alpha 6.9  0.004762
tcttcctgcctcagattcct 995 - 1014- Bsap 8.46  0.0008251
ttaaataaggaaat 1196 - 1209+ SQUA 6.19  0.02823
ctaaatatagacaa 1252 - 1265+ SQUA 7.4  0.014
ctatct 1354 - 1359- GATA-3 6.33  0.003036
tatcacatgg 1416 - 1425+ Max 6.2  0.01563

   1 ATTGACATGTTCACACAGTGAACAATATCCAGGATATATATTGTGCACCT 50
  51 CACACTTAAACTTCTGGACATACCATTCTTGAATGTAAGGGCTGGAAAAT 100
 101 CATTATTTAAAGTCTTATTGTGCTGAATACACAGGTAAATTTTGTATGGA 150
 151 GTACAGGTGTGAATCGCCACAGTAAGAGATTAGAAGATGAAGCTGCAGCC 200
 201 TAGAAAGGGAAAATACGGAAGCAGAATAGGTTAGGAATATGGAAAGGGAT 250
 251 TTGACAACAGAAGGTATCTGCCATTAGCACTTTTTCCTACAAAATCCTCT 300
 301 TAAGACATAAAGTGGGGTATAAGGGAGTTGTTGAGGGTCAAGTGTTGATA 350
 351 ATACATAAAGTGAATAAAAAATATATATACACACACACATACATATATAT 400
 401 ATAAAATTTTGAGGAAAGTACAAAAAAGACAGGGCAAAAATCTTCTAGAT 450
 451 GAATTATTTACTTGCTATATAAGAACAGTTGGTTTGATATTTATAGATTT 500
 501 AACATTTCTGCTATTTTACTTCATAAATAACCTCAGAGACTCAAAATGTG 550
 551 CCAAAGTGTGATTTTGCCAGTTCAGAGAAATGAGTCTAATAGCTAAAAGT 600
 601 ATCCTGGCCAGCTGGCCATCCTCCCGTCAAAGGAGACCTGTGATTTTATT 650
 651 GATCCATTGTTCTTGTTATGATATGATAAATTCTTTCCTGTAAAATAGCA 700
 701 TTTTGAAGAATATATACTCAAACAAGATAGGTGTTTGAGAAAATATTTTC 750
 751 AAGATAGTAAGAAGACCAGCGGCATAAACGAGTGATAGAACATTAACTAG 800
 801 CGTACATGGGCCCCCAAGTTGCACTGGGGTGGAGGGGGTACATTTAATGA 850
 851 CGACCTTTCCAAAAAACAGCCTCCAAAACCTAAAAGTATGTGGGGTTTTT 900
 901 TTGTTTTTTGTTTTTTTGACATGAACAGAATTTCCCCTTTTGTTGGTAGA 950
 951 AACAGGAACTTTCTCACTTGAGGCCAGCCTTGAACTTGCTATAGTCTTCC 1000
1001 TGCCTCAGATTCCTGGGTGCTGTAATTACAGGGATGAACTCTCACACACA 1050
1051 GCCAGATGTGAGGATTGATGAAAAAAAAATACCATTATCGATATCAAGGT 1100
1101 CTTCTAAATTGATTTACTTAGGGAAAATATGCTAGTATTTGGGCTGTTGT 1150
1151 TAATGTCTAGTAAAGAGTCTAAGGAGTTTAAAATCATACGTGATTTTAAA 1200
1201 TAAGGAAATCACAACGAACTTTTAGATTTTTGATAGTATTAGGAAAATTC 1250
1251 TCTAAATATAGACAAAGAGCTGAAGAGTTCCATAGAAGGTGACTAATTTT 1300
1301 GAATGTATTATACATGACTGGAAAGTAACTGCAAGCAAGACTTGAGAGCT 1350
1351 GAGCTATCTCGGTATTTTTATCCAGTGTGTGGGGTGTTATACATGCATCA 1400
1401 CAGCTATAATAGAGCTATCACATGGGACATTCGAGAAAAAAGATAGAGGC 1450
1451 GTTTGAAAGGTTCCTGGGCTTGATTTCTTAAAGGCTGTATTGCTTGGAGT 1500
1501 TCAACAAGAAAGCCAGAGACTAGATATTAAAAGGTGAATTATTTTCAAAA 1550
1551 TTCAGTTGTAACAGAAATAATTTACTTGAAATTATTTCAGGAAATGGAAG 1600
1601 A 1601


Running Parameters:

./clover -p0.375 -u6 -t0.01 -r1000 -s1 

Text output

Page execution time: 310 seconds.