Cister :
Cis
-element Clus
ter
Finder
Instructions
Paste a
DNA sequence
into the box or enter a
GenBank identifier
:
OR upload a DNA sequence from a file:
(Optional)
Set subsequence
From:
To:
Choose a bunch of cis-elements:
TATA
Sp1
CRE
ERE
NF-1
E2F
Mef-2
Myf
CCAAT
AP-1
Ets
Myc
GATA
LSF
SRF
Tef
AND / OR
enter your own cis-elements:
(Get cis-element matrices from
TRANSFAC
- free registration required)
AND / OR upload cis-elements from a file:
Parameters: (use the defaults if in doubt)
a
average distance between motifs within a cluster
b
average number of motifs in a cluster
g
average distance between clusters
w
half-width of sliding window for local base composition
Motif probability threshold
Pseudocount
Contact:
Martin Frith
Last modified: