This directory contains the datasets that were analyzed in our Clover
paper.

15ERE : the 15 estrogen response elements that were embedded in random
sequences to test Clover.

hs_dopamine_nr.fa (56.8% G+C): 23 sequences upstream of human dopamine
responsive genes.
mm_dopamine.fa (53.3% G+C): 23 sequences upstream of mouse dopamine
responsive genes.

15_LSFseqs.efa (51.7% G+C): 15 sequences flanking LSF binding
sites. This file is in "extended fasta format", which just means that
"#" is recognized as a comment character.

muscle_nr.fa (56.0% G+C): 27 muscle regulatory regions, from the
compilation by Wasserman and Fickett.

liver.fa (42.7% G+C): 16 liver regulatory regions, from the
compilation by Krivan and Wasserman (go Wasserman!)

Berman_example_CRM_sequences.fa (43.0% G+C): 19 Drosophila embryonic
regulatory regions, compiled by Berman, Nibu et al.