Paste a DNA sequence into the box or enter a GenBank identifier:
   

OR upload a DNA sequence from a file:
(Optional) Set subsequence From: To:
 
 
  Select a bunch of motifs:
   
TATA   Sp1   CRE   ERE   NF-1   E2F   Mef-2   Myf
CCAAT   AP-1   Ets   Myc   GATA   LSF   SRF   Tef

AND / OR enter your own motifs: (Get motif matrices from JASPAR: matrices, homepage; or TRANSFAC)

AND / OR upload motifs from a file: 		 
 
 
  Parameters:
   
Gap Parameter (average distance between motifs within a cluster):
Cluster Score Threshold: Motif Score Threshold:
Residue Abundance Range: Pseudocount:
Filter Lowercase Letters Filter Low Complexity Regions using Dust
 
 
 
 
Comments and questions to Martin Frith