SW perc perc perc query position in query matching repeat position in repeat score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID 1088 14.5 0.0 0.0 Rand1 3 154 (1846) C AluSx SINE/Alu (159) 153 2 1 17168 2.6 0.0 0.0 Rand10 1 2000 (0) C L1P LINE/L1 (1591) 4555 2556 2 978 21.1 0.6 0.0 Rand12 1054 1228 (772) + MER58A DNA/MER1_type 49 224 (0) 3 225 0.0 0.0 0.0 Rand13 497 521 (1479) + (A)n Simple_repeat 1 25 (0) 4 542 27.8 2.7 1.1 Rand13 766 952 (1048) + L3b LINE/CR1 1302 1491 (92) 5 2146 11.6 0.0 0.0 Rand13 1170 1444 (556) + AluSx SINE/Alu 5 279 (33) 6 180 0.0 0.0 0.0 Rand13 1822 1841 (159) + (A)n Simple_repeat 1 20 (0) 7 504 15.4 0.0 1.3 Rand13 1923 2000 (0) C LTR8A LTR/ERV1 (0) 727 651 8 499 28.9 13.4 0.0 Rand14 1 239 (1761) C L2 LINE/L2 (2084) 1230 960 9 681 21.3 8.6 2.5 Rand14 367 563 (1437) C MIR SINE/MIR (2) 260 52 10 26 5.0 0.0 0.0 Rand14 1049 1088 (912) + AT_rich Low_complexity 1 40 (0) 11 21 0.0 0.0 0.0 Rand14 1594 1614 (386) + AT_rich Low_complexity 1 21 (0) 12 368 31.2 8.3 2.9 Rand15 139 343 (1657) + MIR SINE/MIR 47 262 (0) 13 21 5.7 0.0 0.0 Rand15 904 938 (1062) + AT_rich Low_complexity 1 35 (0) 14 234 19.4 9.7 1.6 Rand15 1285 1346 (654) C L1ME LINE/L1 (318) 5852 5786 15 250 31.5 6.9 1.5 Rand15 1364 1842 (158) C L1ME LINE/L1 (782) 5364 4860 15 342 27.6 2.9 1.9 Rand15 1875 1979 (21) + MLT1I LTR/MaLR 2 107 (302) 17 379 27.3 7.3 6.9 Rand16 45 161 (1839) C L1ME4a LINE/L1 (223) 5898 5783 18 2155 11.4 0.3 0.3 Rand16 162 458 (1542) C AluSx SINE/Alu (15) 297 1 20 379 27.3 7.3 6.9 Rand16 459 696 (1304) C L1ME4a LINE/L1 (338) 5783 5535 18 1631 14.2 0.9 8.3 Rand16 1114 1438 (562) C AluJo SINE/Alu (10) 302 2 21 373 32.1 9.0 1.9 Rand16 1733 2000 (0) C L2 LINE/L2 (0) 3313 3027 22 378 31.5 8.2 0.0 Rand17 32 177 (1823) + MLT1I LTR/MaLR 203 360 (49) 23 861 27.0 5.5 2.1 Rand17 336 665 (1335) + L1MA9 LINE/L1 5936 6276 (36) 24 505 23.5 14.1 0.6 Rand17 700 869 (1131) C MLT1D LTR/MaLR (171) 334 142 25 3349 20.7 2.5 3.9 Rand17 870 913 (1087) + L1M4c LINE/L1 908 951 (5433) 26 2184 11.4 0.0 0.3 Rand17 914 1202 (798) + AluSq SINE/Alu 1 288 (25) 27 3349 20.7 2.5 3.9 Rand17 1203 1999 (1) + L1M4c LINE/L1 951 1737 (4647) 26 225 30.8 2.6 0.0 Rand18 146 223 (1777) + CT-rich Low_complexity 3 82 (0) 28 494 24.6 1.1 2.8 Rand18 1758 1936 (64) C LTR16A1 LTR/ERVL (0) 457 282 29 228 6.7 0.0 0.0 Rand19 240 269 (1731) + (TG)n Simple_repeat 2 31 (0) 30 24 3.2 0.0 0.0 Rand19 748 778 (1222) + AT_rich Low_complexity 1 31 (0) 31 1076 14.1 6.1 0.5 Rand19 802 999 (1001) C L1MB7 LINE/L1 (0) 6184 5976 32 2368 10.9 0.0 0.6 Rand19 1229 1541 (459) C AluSx SINE/Alu (1) 311 1 33 198 21.4 5.4 0.0 Rand2 199 254 (1746) C MIR SINE/MIR (69) 139 81 34 1057 23.3 11.4 2.5 Rand2 1599 1958 (42) C LTR16A1 LTR/ERVL (0) 457 66 35 1153 18.3 0.0 5.5 Rand20 4 238 (1762) + AluJo SINE/Alu 64 285 (27) 36 3932 6.2 2.3 3.7 Rand20 701 947 (1053) C L1PA13 LINE/L1 (0) 6163 5914 37 2401 10.0 0.3 0.0 Rand20 948 1256 (744) + AluSg SINE/Alu 1 310 (0) 38 3932 6.2 2.3 3.7 Rand20 1257 1354 (646) C L1PA13 LINE/L1 (249) 5914 5816 37 2153 10.6 0.3 2.3 Rand20 1355 1655 (345) C AluSq SINE/Alu (18) 295 1 39 3932 6.2 2.3 3.7 Rand20 1656 1873 (127) C L1PA13 LINE/L1 (347) 5816 5607 37 384 23.3 0.0 1.2 Rand3 357 442 (1558) + MER81 DNA/AcHobo 26 110 (4) 40 274 8.6 0.0 0.0 Rand3 634 668 (1332) + U2 snRNA 2 36 (152) 41 421 22.8 0.0 8.1 Rand3 916 1038 (962) + MER81 DNA/AcHobo 2 114 (0) 42 227 26.9 10.8 0.0 Rand3 1163 1255 (745) + MIR SINE/MIR 50 152 (56) 43 477 19.8 0.0 0.0 Rand4 1 86 (1914) + AluJb SINE/Alu 209 294 (18) 44 336 27.1 2.8 1.9 Rand4 93 199 (1801) C MIR SINE/MIR (85) 177 70 45 2045 12.2 2.1 0.3 Rand4 287 572 (1428) + AluSx SINE/Alu 1 291 (21) 46 1121 16.3 0.6 0.0 Rand4 1695 1866 (134) C AluJo SINE/Alu (13) 299 127 47 234 10.5 0.0 0.0 Rand4 1867 1904 (96) + (TG)n Simple_repeat 2 39 (0) 48 264 3.0 0.0 0.0 Rand4 1931 1963 (37) + (TG)n Simple_repeat 1 33 (0) 48 247 6.2 0.0 0.0 Rand4 1964 1995 (5) C AluJo SINE/Alu (182) 120 89 50 447 22.3 22.3 0.7 Rand5 384 522 (1478) + MER5A DNA/MER1_type 14 182 (7) 51 3580 16.3 3.4 3.6 Rand5 684 1089 (911) + L1MB7 LINE/L1 4784 5189 (995) 54 835 16.3 0.0 1.5 Rand5 1090 1224 (776) + FLAM_C SINE/Alu 1 133 (0) 53 3580 16.3 3.4 3.6 Rand5 1225 1975 (25) + L1MB7 LINE/L1 5189 5933 (251) 54 1870 10.4 9.3 1.1 Rand6 558 836 (1164) + AluSx SINE/Alu 2 303 (9) 55 446 27.2 3.9 10.0 Rand6 880 1250 (750) + MLT1I LTR/MaLR 41 394 (15) 56 2204 12.4 2.8 1.4 Rand7 1 356 (1644) C L1MA2 LINE/L1 (279) 6025 5665 58 * 2581 23.6 4.9 3.9 Rand7 356 557 (1443) + L1MDa LINE/L1 1130 1329 (5381) 59 1827 16.7 2.7 0.0 Rand7 558 857 (1143) + AluSx SINE/Alu 1 308 (4) 61 2581 23.6 4.9 3.9 Rand7 858 1999 (1) + L1MDa LINE/L1 1329 3010 (3700) 59 2855 10.8 2.9 2.4 Rand9 1 454 (1546) + HERVH LTR/ERV1 2540 2995 (4718) 63 950 14.0 0.7 0.0 Rand9 434 583 (1417) + HERVH LTR/ERV1 3140 3290 (4423) 63 * 3333 11.9 0.6 0.6 Rand9 574 1075 (925) + HERVH LTR/ERV1 3492 3993 (3720) 63 4207 13.7 2.0 0.3 Rand9 1078 1728 (272) + HERVH LTR/ERV1 4488 5149 (2564) 63 1374 13.2 1.8 1.4 Rand9 1730 1948 (52) + HERVH LTR/ERV1 5600 5819 (1894) 63 323 18.9 0.0 0.0 Rand9 1947 1999 (1) + HERVH LTR/ERV1 7322 7374 (339) 63 *