SeqVISTA:Towards an Integrative Platform for BioSeqs Analyses.

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News

08/03/2005^New

Release version 1.81. Fixed the installation problem in version 1.8. If you are running SeqVISTA as a local application, please download the version 1.81

07/25/2005^New

Release of v1.8, with new features includes:

	Enable search with IUPAC degenerate symbol.
	Enable Search All function to list sequence motifs that matches the searching regular expression
	Enable Search All in All Sequences function. Same function as above, but searched all listed sequences
	Enabled add searched results as the new features when searching with above two new search funtions.
	Enable sequence paste/delete in sequence panel.
	Add a new plug-in for mRNA genome-wide alignment: NCBI Spider

10/02/2004

Release of Integration package so that other Java software can use SeqVISTA as a tool to visualize the sequence-related record.

02/15/2004

	Release of v1.5, add supports to SOAP service of regulatory motif detection.
	Various enhancements, will be documented in release note and corresponding sections of the user manual.

05/07/2003

	The installation instruction for Mac OS has been added based on user request.
	SeqVISTA has been reported by The Scientist Journal and here is the Snapshot.

03/21/2003

Release of v1.02. All registered users will be notified by email.

The problem of loading sequence using accession/gi number has been fixed. We have recently noticed that NCBI changed the default format when retrieving sequence using the Web API and corresponding change has been made for SeqVISTA. If you experience problems using SeqVISTA, please do not hesitate to notify us using email SeqVISTA@zlab.bu.edu.

This release also added following enhancement:

Three new pop-out menu has been added into the tree panel as shown in the following figure. if the reference node has the PubMed/Medline ID, then corresponding link can be loaded into browser using the menu "PubMed/MedLine". The "Copy Text" menu is used to copy the tool-tip text and "Copy All Reference" is used to copy the reference information for corresponding sequence.

2. The tree panel can now auto-scroll the highlighted feature to the visible position, same as the sequence panel and graphic panel.

02/21/2003.

We will now ask you to enter some information (only email is required) when you download SeqVISTA so we can provide you better service. We appreciate your time.

01/26/2003

Release of v1.01 which adds two new features:

Add GenScan Analysis Plugin so the user can now directly perform exon prediction with GenScan.
Based on user requests from University of Washington, we added format auto-identification when loading data through URL, which will facilitate the easy-data exchange within the research community. For example, SeqVISTA will recognize data from URL: http://localhost/SeqVISTA/SampleInput/Alad_RM.gev as Gev format because it ends with .gev. If the the extention (gev in this example) is not registered in SeqVISTA.xml, by default SeqVISTA will try to interpret the data as GenBank format.

More news ......

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